Recreate the functionality of the tool found at the following webpage

The goal of this assignment is to recreate the functionality of the tool found at the following webpage:

http://web.expasy.org/translate/

This webpage allows you to translate DNA sequence into the encoded amino acids. Note all six possible frames are translated – the three possible forward frames along with the three possible frames of the reverse complement.

This tool also allows you to display the sequences in three possible modes: Verbose, Compact, Include nucleotide sequence. Your code should also do this by accepting a single argument that determines which mode that will be used.

Your code should then prompt the user for DNA sequence, print out the output, and continue until they want to quit.

Your program does not need to accept different genetic codes or perform any color/highlighting to the text in the output. Standard text output is fine.

To help you get started, I have created a template script that you must use for your code. Additional functionality or ambiguity is clarified in the comments of that sample code. I have also shown some sample output from the code that I have written for this assignment.

Example output:

$ python3 Assignment2_Solution.py
Invalid number of options

Usage: python3 Assignment2_solution.py <mode>
Mode can be one of the following options:
COMPACT

VERBOSE
DNA

$ python3 Assignment2_Solution.py Compact Verbose Invalid number of options
Usage: python3 Assignment2_solution.py <mode>

Mode can be one of the following options:
COMPACT
VERBOSE
DNA

$ python3 Assignment2_Solution.py Compac
COMPAC not a valid option

Usage: python3 Assignment2_solution.py <mode>
Mode can be one of the following options:
COMPACT

VERBOSE
DNA

$ python3 Assignment2_Solution.py Compact

Enter DNA sequence (or Exit to quit the program): ;sdja;sdf;lkajsdf Invalid DNA sequence. Characters must be one of A, a, C, c, G, g, T, or t Enter DNA sequence (or Exit to quit the program): ASDJFLS:FJKEWL:LKJFKL: Invalid DNA sequence. Characters must be one of A, a, C, c, G, g, T, or t Enter DNA sequence (or Exit to quit the program): exit
$ python3 Assignment2_Solution.py Compact
Enter DNA sequence (or Exit to quit the program):

ATGACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACCATTCAACTCATCCAGAATCACTTTGTCGA AGAATACGACCCGACCATAGAGGACAGCTACAGAAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCG GACAAGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTGGTTTTCGCCGTCAACGAGGCTAAATCT TTCGAGAATGTCGCTAACTACCGCGAGCAGATTCGGAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGA TTTGTCATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCGAATGTCGACACATCTGCCAAAACGC GTATGGGAGTTGATGAAGCATTTTACACACTTGTTAGAGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAG AAGAAGTGTCAAATAATGTGA

5' to 3' Frame: 0
MTEYKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKS
FENVANYREQIRRVKDSDDVPMVLVGNKCDLSSRSVDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREIRKHRERHDNNKPQKK

KKCQIM-

5' to 3' Frame: 1

-RSTSLW-LEMEELVNQHSPFNSSRITLSKNTTRP-RTATESRL--TVRHASSTYWIPPDKKNIRRCVIST-GQAKDFCWFSPSTRLNLSRMSLTTASRFGG-RIQMMFLWSW-GINVICHLDQSTSEQSVRQQRVTVFRMSTHLPKRVWELMKHFTHLLEKFASIVSVTTIISHKRRRSVK-C

5' to 3' Frame: 2

DGVQACGSWRWRSW-ISTHHSTHPESLCRRIRPDHRGQLQKAGCDRR-DMPPRHIGYRRTRRIFGDA-SVHEDRRRISVGFRRQRG-IFRECR-LPRADSEGKGFR-CSYGLGRE-M-FVISISRLPNSQ-DSKGLRYSECRHICQNAYGS--SILHTC-RNSQAS-ASRQ-- ATKEEEVSNNV

3' to 5' Frame: 0
SHYLTLLLLLWLIIVVTLTMLANFSNKCVKCFINSHTRFGRCVDIRNTVTLCCLTDCSEVD-SR-QITFIPYQDHRNII-
ILYPPNLLAVVSDILERFSLVDGENQQKSFACPHVLITHRRIFFLSGGIQYVEEACLTVYHNLLSVAVLYGRVVFFDKVILDELNGEC-
FTNSSISNYHKLVLRH

3' to 5' Frame: 1

HII-HFFFFCGLLLS-RSRCLRISLTSV-NASSTPIRVLADVSTFGIP-PFAVSLTVRKSTDRDDKSHLFPTKTIGTSSESFTLRICSR-LATFSKDLASLTAKTNRNPSPVLMY-SRIAEYSSCPAVSNMSRRHVSPSITTCFL-LSSMVGSYSSTK-FWMS-MVSADLPTPPSPTTTSLYSV

3' to 5' Frame: 2
TLFDTSSSFVAYYCRDAHDACEFL-QVCKMLHQLPYAFWQMCRHSEYRNPLLSH-LFGSRLIEMTNHIYSLPRP-
EHHLNPLPSESARGS-RHSRKI-PR-RRKPTEILRLSSCTDHASPNILLVRRYPICRGGMSHRLSQPAFCSCPLWSGRILRQSDSG-

VEW-VLIYQLLHLQLPQACTPS

Enter DNA sequence (or Exit to quit the program): exit

$ python3 Assignment2_Solution.py Verbose
Enter DNA sequence (or Exit to quit the program):

ATGACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACCATTCAACTCATCCAGAATCACTTTGTCGA AGAATACGACCCGACCATAGAGGACAGCTACAGAAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCG GACAAGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTGGTTTTCGCCGTCAACGAGGCTAAATCT TTCGAGAATGTCGCTAACTACCGCGAGCAGATTCGGAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGA TTTGTCATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCGAATGTCGACACATCTGCCAAAACGC GTATGGGAGTTGATGAAGCATTTTACACACTTGTTAGAGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAG AAGAAGTGTCAAATAATGTGA

5' to 3' Frame: 0

Met T E Y K L V V V G D G G V G K S A L T I Q L I Q N H F V E E Y D P T I E D S Y R K Q V V I D G E T C L L D I L D T A G Q E E Y S A Met R D Q Y Met R T G E G F L L V F A V N E A K S F E N V A N Y R E Q I R R V K D S D D V P Met V L V G N K C D L S S R S V D F R T V S E T A K G Y G I P N V D T S A K T R Met G V D E A F Y T L V R E I R K H R E R H D N N K P Q K K K K C Q I Met Stop

5' to 3' Frame: 1

Stop R S T S L W Stop L E Met E E L V N Q H S P F N S S R I T L S K N T T R P Stop R T A T E S R L Stop Stop T V R H A S S T Y W I P P D K K N I R R C V I S T Stop G Q A K D F C W F S P S T R L N L S R Met S L T T A S R F G G Stop R I Q Met Met F L W S W Stop G I N V I C H L D Q S T S E Q S V R Q Q R V T V F R Met S T H L P K R V W E L Met K H F T H L L E K F A S I V S V T T I I S H K R R R S V K Stop C
5' to 3' Frame: 2

D G V Q A C G S W R W R S W Stop I S T H H S T H P E S L C R R I R P D H R G Q L Q K A G C D R R Stop D Met P P R H I G Y R R T R R I F G D A Stop S V H E D R R R I S V G F R R Q R G Stop I F R E C R Stop L P R A D S E G K G F R Stop C S Y G L G R E Stop Met Stop F V I S I S R L P N S Q Stop D S K G L R Y S E C R H I C Q N A Y G S Stop Stop S I L H T C Stop R N S Q A S Stop A S R Q Stop Stop A T K E E E V S N N V

3' to 5' Frame: 0

S H Y L T L L L L L W L I I V V T L T Met L A N F S N K C V K C F I N S H T R F G R C V D I R N T V T L C C L T D C S E V D Stop S R Stop Q I T F I P Y Q D H R N I I Stop I L Y P PNLLAVVSDILERFSLVDGENQQKSFACPHVLITHRRIFFLSGGI Q Y V E E A C L T V Y H N L L S V A V L Y G R V V F F D K V I L D E L N G E C Stop F T N SSISNYHKLVLRH


3' to 5' Frame: 1

H I I Stop H F F F F C G L L L S Stop R S R C L R I S L T S V Stop N A S S T P I R V L A D V S T F G I P Stop P F A V S L T V R K S T D R D D K S H L F P T K T I G T S S E S F T L R I C S R Stop L A T F S K D L A S L T A K T N R N P S P V L Met Y Stop S R I A E Y S S C P A V S N Met S R R H V S P S I T T C F L Stop L S S Met V G S Y S S T K Stop F W Met S Stop Met V S A D L P T P P S P T T T S L Y S V

3' to 5' Frame: 2

T L F D T S S S F V A Y Y C R D A H D A C E F L Stop Q V C K Met L H Q L P Y A F W Q Met C R H S E Y R N P L L S H Stop L F G S R L I E Met T N H I Y S L P R P Stop E H H L N P L P S E S A R G S Stop R H S R K I Stop P R Stop R R K P T E I L R L S S C T D H A S P N I L L V R R Y P I C R G G Met S H R L S Q P A F C S C P L W S G R I L R Q S D S G Stop V E W Stop V L I Y Q L L H L Q L P Q A C T P S

Enter DNA sequence (or Exit to quit the program): exit

$ python3 Assignment2_Solution.py DNA
Enter DNA sequence (or Exit to quit the program):

ATGACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACCATTCAACTCATCCAGAATCACTTTGTCGA AGAATACGACCCGACCATAGAGGACAGCTACAGAAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCG GACAAGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTGGTTTTCGCCGTCAACGAGGCTAAATCT TTCGAGAATGTCGCTAACTACCGCGAGCAGATTCGGAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGA TTTGTCATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCGAATGTCGACACATCTGCCAAAACGC GTATGGGAGTTGATGAAGCATTTTACACACTTGTTAGAGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAG AAGAAGTGTCAAATAATGTGA

5' to 3' Frame: 0
ATGACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACC
M    T    E    Y    K    L    V    V    V    G    D    G    G    V    G    K    S    A    L    T
ATTCAACTCATCCAGAATCACTTTGTCGAAGAATACGACCCGACCATAGAGGACAGCTAC

I    Q    L    I    Q    N    H    F    V    E    E    Y    D    P    T    I    E    D    S    Y
AGAAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCGGA
R    K    Q    V    V    I    D    G    E    T    C    L    L    D    I    L    D    T    A    G

CAAGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTG
Q    E    E    Y    S    A    M    R    D    Q    Y    M    R    T    G    E    G    F    L    L
GTTTTCGCCGTCAACGAGGCTAAATCTTTCGAGAATGTCGCTAACTACCGCGAGCAGATT

V    F    A    V    N    E    A    K    S    F    E    N    V    A    N    Y    R    E    Q    I
CGGAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGATTTG
R    R    V    K    D    S    D    D    V    P    M    V    L    V    G    N    K    C    D    L

TCATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCG
S    S    R    S    V    D    F    R    T    V    S    E    T    A    K    G    Y    G    I    P
AATGTCGACACATCTGCCAAAACGCGTATGGGAGTTGATGAAGCATTTTACACACTTGTT

N    V    D    T    S    A    K    T    R    M    G    V    D    E    A    F    Y    T    L    V
AGAGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAGAAGAAG

REIRKHRERHDNNKPQKKKK TGTCAAATAATGTGA

C    Q    I    M    -

5' to 3' Frame: 1
TGACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACCA

    • RSTSLW-LEMEELVNQHSP TTCAACTCATCCAGAATCACTTTGTCGAAGAATACGACCCGACCATAGAGGACAGCTACA FNSSRITLSKNTTRP-RTAT GAAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCGGAC ESRL--TVRHASSTYWIPPD AAGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTGG KKNIRRCVIST-GQAKDFCW TTTTCGCCGTCAACGAGGCTAAATCTTTCGAGAATGTCGCTAACTACCGCGAGCAGATTC FSPSTRLNLSRMSLTTASRF GGAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGATTTGT GG-RIQMMFLWSW-GINVIC CATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCGA HLDQSTSEQSVRQQRVTVFR ATGTCGACACATCTGCCAAAACGCGTATGGGAGTTGATGAAGCATTTTACACACTTGTTA MSTHLPKRVWELMKHFTHLL GAGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAGAAGAAGT EKFASIVSVTTIISHKRRRS GTCAAATAATGT

VK-C

5' to 3' Frame: 2

GACGGAGTACAAGCTTGTGGTAGTTGGAGATGGAGGAGTTGGTAAATCAGCACTCACCAT DGVQACGSWRWRSW-ISTHH TCAACTCATCCAGAATCACTTTGTCGAAGAATACGACCCGACCATAGAGGACAGCTACAG STHPESLCRRIRPDHRGQLQ AAAGCAGGTTGTGATAGACGGTGAGACATGCCTCCTCGACATATTGGATACCGCCGGACA KAGCDRR-DMPPRHIGYRRT AGAAGAATATTCGGCGATGCGTGATCAGTACATGAGGACAGGCGAAGGATTTCTGTTGGT RRIFGDA-SVHEDRRRISVG TTTCGCCGTCAACGAGGCTAAATCTTTCGAGAATGTCGCTAACTACCGCGAGCAGATTCG FRRQRG-IFRECR-LPRADS GAGGGTAAAGGATTCAGATGATGTTCCTATGGTCTTGGTAGGGAATAAATGTGATTTGTC EGKGFR-CSYGLGRE-M-FV ATCTCGATCAGTCGACTTCCGAACAGTCAGTGAGACAGCAAAGGGTTACGGTATTCCGAA ISISRLPNSQ-DSKGLRYSE TGTCGACACATCTGCCAAAACGCGTATGGGAGTTGATGAAGCATTTTACACACTTGTTAG CRHICQNAYGS--SILHTC-AGAAATTCGCAAGCATCGTGAGCGTCACGACAATAATAAGCCACAAAAGAAGAAGAAGTG RNSQAS-ASRQ--ATKEEEV TCAAATAATGTG

S    N    N    V

3' to 5' Frame: 0

TCACATTATTTGACACTTCTTCTTCTTTTGTGGCTTATTATTGTCGTGACGCTCACGATG SHYLTLLLLLWLIIVVTLTM CTTGCGAATTTCTCTAACAAGTGTGTAAAATGCTTCATCAACTCCCATACGCGTTTTGGC LANFSNKCVKCFINSHTRFG AGATGTGTCGACATTCGGAATACCGTAACCCTTTGCTGTCTCACTGACTGTTCGGAAGTC RCVDIRNTVTLCCLTDCSEV GACTGATCGAGATGACAAATCACATTTATTCCCTACCAAGACCATAGGAACATCATCTGA D-SR-QITFIPYQDHRNII-ATCCTTTACCCTCCGAATCTGCTCGCGGTAGTTAGCGACATTCTCGAAAGATTTAGCCTC ILYPPNLLAVVSDILERFSL GTTGACGGCGAAAACCAACAGAAATCCTTCGCCTGTCCTCATGTACTGATCACGCATCGC VDGENQQKSFACPHVLITHR CGAATATTCTTCTTGTCCGGCGGTATCCAATATGTCGAGGAGGCATGTCTCACCGTCTAT RIFFLSGGIQYVEEACLTVY CACAACCTGCTTTCTGTAGCTGTCCTCTATGGTCGGGTCGTATTCTTCGACAAAGTGATT HNLLSVAVLYGRVVFFDKVI CTGGATGAGTTGAATGGTGAGTGCTGATTTACCAACTCCTCCATCTCCAACTACCACAAG LDELNGEC-FTNSSISNYHK CTTGTACTCCGTCAT
L    V    L    R    H

3' to 5' Frame: 1

CACATTATTTGACACTTCTTCTTCTTTTGTGGCTTATTATTGTCGTGACGCTCACGATGC HII-HFFFFCGLLLS-RSRC TTGCGAATTTCTCTAACAAGTGTGTAAAATGCTTCATCAACTCCCATACGCGTTTTGGCA LRISLTSV-NASSTPIRVLA GATGTGTCGACATTCGGAATACCGTAACCCTTTGCTGTCTCACTGACTGTTCGGAAGTCG DVSTFGIP-PFAVSLTVRKS ACTGATCGAGATGACAAATCACATTTATTCCCTACCAAGACCATAGGAACATCATCTGAA TDRDDKSHLFPTKTIGTSSE TCCTTTACCCTCCGAATCTGCTCGCGGTAGTTAGCGACATTCTCGAAAGATTTAGCCTCG SFTLRICSR-LATFSKDLAS TTGACGGCGAAAACCAACAGAAATCCTTCGCCTGTCCTCATGTACTGATCACGCATCGCC LTAKTNRNPSPVLMY-SRIA GAATATTCTTCTTGTCCGGCGGTATCCAATATGTCGAGGAGGCATGTCTCACCGTCTATC EYSSCPAVSNMSRRHVSPSI ACAACCTGCTTTCTGTAGCTGTCCTCTATGGTCGGGTCGTATTCTTCGACAAAGTGATTC TTCFL-LSSMVGSYSSTK-F TGGATGAGTTGAATGGTGAGTGCTGATTTACCAACTCCTCCATCTCCAACTACCACAAGC WMS-MVSADLPTPPSPTTTS TTGTACTCCGTC

L    Y    S    V

3' to 5' Frame: 2

ACATTATTTGACACTTCTTCTTCTTTTGTGGCTTATTATTGTCGTGACGCTCACGATGCT TLFDTSSSFVAYYCRDAHDA TGCGAATTTCTCTAACAAGTGTGTAAAATGCTTCATCAACTCCCATACGCGTTTTGGCAG CEFL-QVCKMLHQLPYAFWQ ATGTGTCGACATTCGGAATACCGTAACCCTTTGCTGTCTCACTGACTGTTCGGAAGTCGA MCRHSEYRNPLLSH-LFGSR CTGATCGAGATGACAAATCACATTTATTCCCTACCAAGACCATAGGAACATCATCTGAAT LIEMTNHIYSLPRP-EHHLN CCTTTACCCTCCGAATCTGCTCGCGGTAGTTAGCGACATTCTCGAAAGATTTAGCCTCGT PLPSESARGS-RHSRKI-PR TGACGGCGAAAACCAACAGAAATCCTTCGCCTGTCCTCATGTACTGATCACGCATCGCCG

    • RRKPTEILRLSSCTDHASP AATATTCTTCTTGTCCGGCGGTATCCAATATGTCGAGGAGGCATGTCTCACCGTCTATCA NILLVRRYPICRGGMSHRLS CAACCTGCTTTCTGTAGCTGTCCTCTATGGTCGGGTCGTATTCTTCGACAAAGTGATTCT QPAFCSCPLWSGRILRQSDS GGATGAGTTGAATGGTGAGTGCTGATTTACCAACTCCTCCATCTCCAACTACCACAAGCT G-VEW-VLIYQLLHLQLPQA TGTACTCCGTCA

CTPS

Enter DNA sequence (or Exit to quit the program): exit